Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Nicotiana tabacum

CDS Sequence

CDS ID	lcl\|NW_015915107.1_cds_XP_016464997.1_57983
CDS Infomation	[gene=LOC107787896] [db_xref=GeneID:107787896] [protein=putative E3 ubiquitin-protein ligase LIN isoform X3] [protein_id=XP_016464997.1] [location=complement(join(427..444,563..808,893..1039,1301..1423,1522..1653,1962..2078,2156..2280,2446..2752,2852..3106,3192..3336,3420..4529,4596..4681,4781..5020,6460..7233))] [gbkey=CDS]
Sequence	ATGGCTACCTCCACCCTTTTAGACAACATCCTCCGCCACACCACCGTGTTCCTGTTGGAG ATCCTTTCGCAATCTGACCTACGTCGCCGTCTTTTCTCAGTTTTTCTTCAAAGAATTCAA TCCGATAAGCCCCTCAATCTTGCAGCTGAAACTATAGAAAATGCAGTTTCCCCTTCCAAC TCTTCCATCAAATCTTCCTCTCTCAGACTGGCGGAAAAGATCCTTCTTTCTTATTCTGAA AACCCATTTTCTTCCTTTTTGTTATCCCTCGTTTACACTCTTCTGGGCAGACCACAGGAT GCTGCTCTTAGTCTTCTTGATGTGTTTTACACCGACCCTTCAATTGCAAGATTGGAAATT GCACCCCTTGTTTTTGAAGAGCTATTTCTCATTCATTTTATTCCCATTCTTCAATGGTAT AATGAGCAAAGGTCAAGAATTATGTCTTGCATATCACTAAATTCGGGTTATCATGGCGAT GATGAGTCAGTGGTGGTTTTAGCAGCTACGAATTCATTGTCAGCTATGAGTGGAGAGCAA TCTTCGGAGTTGAGAAATTTGGAGAGAGAGTATGAAGAAATTCTTGATGAGAATTGTAGG GTTTTCGCTCAATATTTCAAGGAGATTTTGCGTAATAAAGATGGGAGCAAGTTCACGGAT CCGCTATCCGTAATAGTACAACGGAATGAAAAGAGTGAATGCTATTTTGTGTTTAGCAAA GAGGAGAAGATGACCAATGAAGAATTCGGACTGAAAAATGGACGGTATTATAATCCAATA TGGGCAGATTCTGCTGAAGGAGACAAGTCGTTCAAATTCAATATGAGTAGCAAGAATTTG TCCAAGTTTCCATCATTTTATCCCGAGAGAGTTTCTCTGAAAGTGTTTACAAACCAAAGA TCATCAACAAAACCAAAGCCTTTCGGCAATTTCAATTTTGATTCTGTACCAAAGTCTTGT TCAAGTGAAAATTCCAGTGATCCTTATTCCACAGAATCTGAAGCCGAAAATGAGGACATG AACAAAAGAATGGCATTGCTCAACACAAGGCAGAGGCAAAACTTAAACGAAAAGCAGCCT ATTTTGGGAGAATCAAGCTGCAGCCATCCAGATCCTTTGATGGAAGACTATGATAATATG CAATCCAGTGGAAAAAATACACCTCCAAAGGATTTTGTATGTCCTATAACTACTCATGTA ATTGAAGATCCAGTGACTCTTGAGACTGGTCAGACATATGAAAGAAAGGCAATTCAAGAA TGGTTGGAAAGAGGGAACTCCACTTGCCCAATCACACGGCATAAGCTACATAGTACTCAA CTACCAAAAACAAATTACGTGCTCAAGCGCCTCATAGCAAGCTGGCAGGAAAAGGACCAG AATTCAGCTCTTGTTAAAACGAAACTAATTGCACCGACTGAATATGAACCAGTGAAGAAC AAGCCTGGAACCATCAGTGAGCTTCGTCGTGCAATAACCAGCCTCTGTACATCAGAGATT TTGAGAGAGTCTGAAATGGCAGTGCTCCAAATTGAGCAGTTCTGGAGAGAAGGTCAGATG GTTGATATTCAGACAATGATCTCAAAACCTCCAGTTACCAATGGTTTTGTAGAGATCCTT TTCAGTTCTGTTGATCCCCATGTTCTGATGGCGACAGTATTTCTCCTTTCTGAACTGGGC TCAAGAGATAATGGTGTCATCCAAACACTGTCCAGAGTTGAGACTGATGTAGAATGCATT ATTGGTCTTTTCCAGAAGGGGTTACTGGAAGCTGTTGTTTTGATCTATCTTTTGATTCCA TTGATTGGGAATCTAACAGACATGGACTTGTTGGATTCTCTTTTGAAAGTTGTCATGAGT AAGGAGGAAGACTTGGTTAATATGTTCATGAAGCCCAAAGCTGCTTCAGTGCTACTTCTG GGACATATTCTTAGAAACACAGATGATAAAGGAGCTCCCAAAATTGCTAAGAGGTTGACT TCAGCAAAAGTAGTTGAGGCTATTGCAGGCAGCTTGGAAGCTGAACTAGAGGAAGAACGA CTATCAGCTGTGGTTATACTGTTGAGATGCATGCAATTGGATGGAAGATGCAGGAATATG ATAGCTGACAAAGCACAACTAACTCACCTGTTAGAGAGCTTCATTGGAGCAAACGATGCA TATAGGTTTGAGATTGTCCAATTCCTATCTGAACTAGTCAAGTTAAACAGGAGGACACTT AATGAGCAAGTGTTGCACATAATTAAGAATGAAGGTAGCTATAGCTCAATGCACAGCCTC CTCATATATCTTCAGACAGCTCTCCCTCATCAGTGTCCTGTTGTGGCTGGCCTACTTCTC CAACTTGATCTGCTTGCAGAACCAAGGAAAATGAGCATCTACAGGGAGGAAGCTGTAGAT GTCCTAATTATGTGTCTCAGAAATTCGGATTATCCTGCCTCTCAAATAGCTGCTGCTGAG ACAATTTTAGCACTCGAGGGAAGGTTTTCCTATTCTGGGAAGCCTCTTATCAGGGAATTT CTGCTTAAACGTGCAGGACTTGATGGGACAGATAACAATGTGGCACAAAATAAAATTAGA TATCCATCTAATGATAGTCAAGAAATAACGGAAGAAGAGAAAGCCGCTGAGGACTGGGAG AGGAAAATAGCATTTTCTCTGGTCAGCTATGAATTTGGATTACTATTTGAGGCTTTAGCG GAGGGCATGAAAAGTAAATCAACAGATTTATTTTCCGCATGTTTCGTGTCTGCTACTTGG CTGGTATACATGCTGACCGCTCTTCCAGACACTGGAATTAGAGGAGCAGCAAGAGTATGC TTTCTCAAGCAGTTTGTATCAATATTTAAGTCTTCCAGAGACACAGAGAATAAAGCACTT AGCTTGCTTGCACTGAGGAGCTTTATCCATGAGCCTGAAGGACTGCATGATCTTACAAAC CATGTCAAGGATATACGCAAAGGCTTGAGAGAGCTAAAGAAATCATCCACCATTGCTGTT GAAATGTTAAACCTTTTCTCAGAAGAGCGTGAATCAAGTGCAGATATGTGGAATCATAAA CAAATTGTACAAGAGGATTGCAATGTTAACGGTGAAGTCAATTCAATTGTGTTCTTCAGA AATAAAGTTTTTTCCAGTCATACAGATGGATCTATAAAGGTGTGGAAAGTAAAAGCCAAA AGTTTACACCTCATTCAAGATATCCGGGAACATCTCAAAGCGGTGACAAGCCTGGTAGTA GTACACTCAGCAGAAAAATTATACAGTGGTTCACTTGATAGAACTGTGAGGGTGTGGTTA ATCCAGGATGAAGGAATAGAATGTGAAGAAGTTCATGAAATGAAGGATCATGTCAATAAC CTACTGGTTGCAAATAGCTTGTCATGCTTCCTTCCTCAAGGAAGTGGAATTAAGGAAGTT GATTTGCCAACTGGAACAATTAATTCTATTCAAAGCGGCTCAAGAAAATTATTAGGGAAA TCAAGTCCAATTTATGCCATACAAGTTCATGATGGACTACTATATTCAGCTGGTACATCC ATGGATGGAGGAGCTGTGAAGATATGGAATACGGAAAATTACAGTATGGTTGGATCATTG CCATCTACATTAGAAATTCGTGCAATGGCTGTCAGTTCAGAGCTTGTCTATCTAGGGGGG AAAGGCGGAATTTTGGAAGTCTGGTGTAAAAAGAAACATAATAGAGTGGAAGCACTACAA ACTGGTATAAATGGTAAAATTCTTTGTATGGCTCTTGATGTTAATGAAGAAACTTTGGTT ATTGGAACATCTGATGGCAGAATTCAGGTTTGGGGGCTGAGTTGA

Peptide Sequence

PEP ID	XP_016464997.1
PEP Infomation	PREDICTED: putative E3 ubiquitin-protein ligase LIN isoform X3 [Nicotiana tabacum]
Sequence	MATSTLLDNILRHTTVFLLEILSQSDLRRRLFSVFLQRIQSDKPLNLAAETIENAVSPSN SSIKSSSLRLAEKILLSYSENPFSSFLLSLVYTLLGRPQDAALSLLDVFYTDPSIARLEI APLVFEELFLIHFIPILQWYNEQRSRIMSCISLNSGYHGDDESVVVLAATNSLSAMSGEQ SSELRNLEREYEEILDENCRVFAQYFKEILRNKDGSKFTDPLSVIVQRNEKSECYFVFSK EEKMTNEEFGLKNGRYYNPIWADSAEGDKSFKFNMSSKNLSKFPSFYPERVSLKVFTNQR SSTKPKPFGNFNFDSVPKSCSSENSSDPYSTESEAENEDMNKRMALLNTRQRQNLNEKQP ILGESSCSHPDPLMEDYDNMQSSGKNTPPKDFVCPITTHVIEDPVTLETGQTYERKAIQE WLERGNSTCPITRHKLHSTQLPKTNYVLKRLIASWQEKDQNSALVKTKLIAPTEYEPVKN KPGTISELRRAITSLCTSEILRESEMAVLQIEQFWREGQMVDIQTMISKPPVTNGFVEIL FSSVDPHVLMATVFLLSELGSRDNGVIQTLSRVETDVECIIGLFQKGLLEAVVLIYLLIP LIGNLTDMDLLDSLLKVVMSKEEDLVNMFMKPKAASVLLLGHILRNTDDKGAPKIAKRLT SAKVVEAIAGSLEAELEEERLSAVVILLRCMQLDGRCRNMIADKAQLTHLLESFIGANDA YRFEIVQFLSELVKLNRRTLNEQVLHIIKNEGSYSSMHSLLIYLQTALPHQCPVVAGLLL QLDLLAEPRKMSIYREEAVDVLIMCLRNSDYPASQIAAAETILALEGRFSYSGKPLIREF LLKRAGLDGTDNNVAQNKIRYPSNDSQEITEEEKAAEDWERKIAFSLVSYEFGLLFEALA EGMKSKSTDLFSACFVSATWLVYMLTALPDTGIRGAARVCFLKQFVSIFKSSRDTENKAL SLLALRSFIHEPEGLHDLTNHVKDIRKGLRELKKSSTIAVEMLNLFSEERESSADMWNHK QIVQEDCNVNGEVNSIVFFRNKVFSSHTDGSIKVWKVKAKSLHLIQDIREHLKAVTSLVV VHSAEKLYSGSLDRTVRVWLIQDEGIECEEVHEMKDHVNNLLVANSLSCFLPQGSGIKEV DLPTGTINSIQSGSRKLLGKSSPIYAIQVHDGLLYSAGTSMDGGAVKIWNTENYSMVGSL PSTLEIRAMAVSSELVYLGGKGGILEVWCKKKHNRVEALQTGINGKILCMALDVNEETLV IGTSDGRIQVWGLS

Transcript Sequence

Gene sequence data has not been registered.